DMRfinder

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Input data for methylation count extraction.

1

Hi, I am interested in finding differentially methylated regions, and I have processed my PE-reads with Bismark. I wanted to try DMRfinder to identify DMR, but I wanted to ask...

desmodus1984

findDMRs.r error

9

Hello all! When running findDMRs.r, one error came out. But, I don't know why that error came out. There were 50 or more warnings (use warnings() to see the first...

dahun73

Issue using combine_CpG_sites.py with supplied example

1

Hi @jsh58 Before tyring with my own data, I wanted to use DMRfinder with the supplied examples to make sure I understand the workflow. The sample data I used is...

nickyph

Hello, Is there a way that I can use multiple cores to run the findDMRs.r? The DSS uses BPPARAM to run on multiple cores, but it's not included in the...

Kennyluo4

combine_CpG_sites sample number issue

1

Hi. I'm trying to do combine_CpG_sites with my 1359 samples. However, the error message "Error! Cannot read input file 1021st sample" appears when receiving more than 1020 samples as input....

Kumahgshin