Jean-Yves Sgro

**SOLVED** thank to Yihui's answer. Problem was due to some changes in Markdown. See his answer in https://github.com/yihui/tinytex/issues/230 SUMMARY if you have this problem: 1. update with **`remotes::install_github('rstudio/rmarkdown')`** 2. Also...

I am not sure what version you were using, but my circles are larger and there is not such blank space in my output. I am using R 3.6.3 and...

**FileZilla**: there has been a lot of reports about security risks (easy google search) and that is probably the reason it was removed from use in these lessons. `scp` has...

Learning about grep and redirect is useful in many cases. In order to "mimic" an AWS instance for a local (laptop) teaching I first used Ubuntu (20.04 LTS) within `docker`...

## File deletion warning Continuing on these old remarks for [Working with Files and Directories](https://datacarpentry.org/shell-genomics/03-working-with-files/index.html) that might be useful to add in the [Instructor Notes](https://datacarpentry.org/shell-genomics/guide/index.html) as a **Warning**: Using Docker...

I was so baffled by this (above comment: ["**File deletion warning**"](https://github.com/datacarpentry/shell-genomics/issues/153#issuecomment-909663577)) that I opened an issue on the [Docker Github](https://github.com/docker/for-mac/issues/5944) and the gist of it is that on a Mac,...

Hi Sarah, Did you all have a coding marathon yesterday on this... that I missed? I am replying by email because I cannot find this specific conversation on gihtub. I...

Hello Sarah and A Turner. I think that I was able to squash some of the commits (by Github Desktop - I don't have Tower.) However, I see that there...

I have implemented the change suggestions that were added yesterday. For all except a couple of them the suggestion was implemented exactly as suggested and the conversation marked as "resovled."...

I have done this as suggested by Sarah: *This means that you would remove the changed `docker-intro.zip` file and other fa and fasta files from this PR. Then instead you...