James Bourbeau

Partial chunk reads

7

The ability for zarr to support partial chunk reads has come up a couple of times (xref https://github.com/zarr-developers/zarr-python/issues/40, https://github.com/zarr-developers/zarr-python/issues/521). One benefit of supporting this would be [improvements to slicing operations](https://github.com/zarr-developers/zarr-python/issues/40#issuecomment-236458047)...

Run tests in docker container

1

This PR updates the Travis CI tests to run in a docker container that has HTCondor installed. This allows us to have integration tests.

Add pre/post script functionality for dagman jobs

1

Currently there is no option for having pre or post scripts when submitting a DAGMan job ([relevant script documentation](http://research.cs.wisc.edu/htcondor/manual/v8.6/2_10DAGMan_Applications.html#SECTION003102400000000000000)).

This PR removes the `job_name` variable from Dagman node names. This was causing issues when argument names included automatic variables used by condor (e.g. '$(Process)', '$(Cluster)', etc). Currently, for `Job`s...

#### Description Currently `Job` argument names can be any string. However, when they include automatic variables used by condor (e.g. '$(Process)', '$(Cluster)', etc), unexpected behavior can occur. #### Steps/code to...

[WIP] Attempt to use single submit file template with dag

4

Want to see if it's possible to use a single `Job` submit file when using a `Dagman`

This PR: - Updates the minimum support Python version to 3.6 - Adds CI builds for Python 3.7 and 3.8 - Switches CI test to run on GitHub Actions instead...

This PR adds support for user-defined stopping condition. Here, I'll just focus on implementing a test statistic-based stopping condition so we can support the current default behavior of `iterative_unfold`. However,...

Custom iteration stopping

2

We could consider allowing callbacks that enables custom, user-defined iteration stopping. For example, there are cases where users may want to compare unfolded distributions to data distributions and stop unfolding...

Add callbacks

1

I'd like to add callback functionality to `iterative_unfold`. These `Callback` objects would be called after each iteration of unfolding. A couple I can think of off the top of my...