Julianus Pfeuffer
Julianus Pfeuffer
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Double check this one.
Yes, happy to hear your input, otherwise I just add yet another iteration scheme just for pyopenms with a fixed aggregation function for my needs. Maybe we can gather common...
Yes I think Ill go for your last suggestion a) because of pyopenms b) we probably actually want lazy evaluation. We do not want an intermediate datastructure to offer a...
I don't think you can. How do you even distinguish 18O from O in your fasta file for database search? Maybe explain further what you want to do?
I have seen people doing 16O/18O analysis with the following labeling modification(s): https://www.unimod.org/modifications_view.php?editid1=193 https://www.unimod.org/modifications_view.php?editid1=258 AFAICS this labeling modification is for the cterm, not specifically Methionine. Is this what you need?
To reduce memory footprint of the pepidx with many mods or unspecific cleavage. Can be solved on sage side of course but then (probably) only run sequentially on the same...
Is it? I'm not sure. You mean because of mzml reading overhead? I guess even if you chunk on the same machine, you would need to stream the mzmls multiple...
Coderabbit is probably right here. The package type is only set in the packaging step. Cmake will reconfigure. And probably rebuild the whole project since it's one of the earliest...
Hmm but building twice won't be the solution. It will build once with the internal SQLite (run the tests) and then again with the external. If we don't/can't fix that...