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could not find the raw "ncbi_lineages" file

Open CaiCheng1996 opened this issue 5 months ago • 1 comments

Hi ! very insteresting tools. I have problems in step 2 for running ncbitax2lin to generate a raw "ncbi_lineages" file from the NCBI taxdump. Here is the report:

gzip: ncbi_lineages_.csv.gz: No such file or directory mv: Not available "ncbi_lineages_.csv" stat: No such file or directory ls: inaccessible ./ncbi_lineages_*.csv: No such file or directory

Finished generating a raw "ncbi_lineages" file named Keep it in case you want to run genEra with another species (-r)

ERROR: genEra could not find the raw "ncbi_lineages" file:

If step 1 ran succesfully, the user can resume from this step using the argument -p Exiting

Could you give me some suggestions?

CaiCheng1996 avatar Sep 30 '24 02:09 CaiCheng1996