Joshua Orvis
Joshua Orvis
User @kayussky911 reports: convert_augustus_to_gff3.py -i augustus_erins.gtf -o new_augustus my input looks like, scaffold10x_1 AUGUSTUS gene 3591 4530 0.27 - . g1 scaffold10x_1 AUGUSTUS transcript 3591 4530 0.27 - . g1.t1...
From Suvvi: Just a reminder that mRNA feature needs to be avoided in tbl while converting gff or genbank file into tbl file. The genome that I submitted with mRNA...
We have need of a script which simulates fragmented sequences based on more-complete input sequence. This is perhaps best illustrated with a current use case. We are using unsheared, paired-end...
Kyle - This is something you requested, but could you add a comment with a bit more information? Do you just need the class to be created or do you...
The biothings module doesn't currently support features having multiple parents, which is necessary to support a lot of reasons GFF3 was written (over GFF2) in the first place. http://www.bioinformatics.org/wiki/Generic_Feature_Format#GFF_Version_3
There are some classes of Augustus output genes that are a bit puzzling, such as the one below. The transcript starts with an intron and then the following (first) CDS...
One of the really common tasks when given a FASTQ file is to find the following statistics: - total read count - total base count While this is trivial itself,...
One of the really common tasks when given a FASTA file is to find the following statistics: - Total sequence count - Total base count - GC content - Longest...
…rsions earlier and later.
This is about the Docs. More detail is needed ### Overview of the problem This is about the Bulma **Docs** I'm using Bulma **version** [0.9.4] My **browser** is: Chrome Version...