ergatis
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find: ‘shell’: No such file or directory
My Ubunbtu:
lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 22.04.2 LTS
Release: 22.04
Codename: jammy
wget and tar
sudo wget https://github.com/jorvis/ergatis/archive/refs/tags/v2r19b4.tar.gz
sudo tar -xvf v2r19b4.tar.gz
Makefile.PL
sudo /usr/bin/perl Makefile.PL INSTALL_BASE=/opt/ergatis
checking necessary perl modules:
Bio::Seq : found
CDB_File : found
Class::Struct : found
CGI::Session : found
Config::IniFiles : found
DB_File : found
Data::Dumper : found
Date::Manip : found
File::Basename : found
File::Copy : found
File::Find : found
File::Mirror : found
File::Path : found
File::Spec : found
Getopt::Long : found
HTML::Template : found
IO::File : found
IO::Tee : found
IPC::Open3 : found
LWP::Simple : found
Log::Cabin : found
Log::Log4perl : found
Mail::Mailer : found
Math::Combinatorics : found
MLDBM : found
PerlIO::gzip : found
Storable : found
URI::Escape : found
XML::LibXML : found
XML::Parser : found
XML::RSS : found
XML::Twig : found
XML::Writer : found
all modules found, carrying on
Writing makefile to install directory . to /opt/ergatis
Checking if your kit is complete...
Looks good
Generating a Unix-style Makefile
Writing Makefile for ergatis
Writing MYMETA.yml and MYMETA.json
make
/var/ergatis-2r19b4/install$ sudo make
cp perl2wrapper_ergatis.pl blib/lib/perl2wrapper_ergatis.pl
cp check_installation.pl blib/lib/check_installation.pl
cp python2wrapper_ergatis.pl blib/lib/python2wrapper_ergatis.pl
Manifying 1 pod document
make install
sudo make install
Manifying 1 pod document
mkdir -p /opt/ergatis/docs
mkdir -p /opt/ergatis/docs/documentation
mkdir -p /opt/ergatis/samples
Installing samples
find -type f -exec install {} /opt/ergatis/samples \;
Installing shell wrappers
find shell -type f -exec install {} /opt/ergatis/bin \;
find: ‘shell’: No such file or directory
make: *** [Makefile:885: shellwrappers] Error 1
Seems to still be some versioning issues between the installer here and directory structure present. but at least here you should be able to just do this before the make install:
mkdir shell
Still error:
sudo make install
Manifying 1 pod document
mkdir -p /opt/ergatis/docs
mkdir -p /opt/ergatis/docs/documentation
mkdir -p /opt/ergatis/samples
Installing samples
find -type f -exec install {} /opt/ergatis/samples \;
Installing shell wrappers
find shell -type f -exec install {} /opt/ergatis/bin \;
Compiling C applications and installing in /opt/ergatis/bin
make -C src/cluster
make[1]: *** src/cluster: No such file or directory. Stop.
make: *** [Makefile:895: c_apps] Error 2
Any help is welcome.