AccuSyn Not accepting Chromosome IDs

[sanyalab]

Hello,

I would like to use the AccuSyn Tool, but get an error The first column in the GFF file is not following the correct format. The last character of the chromosomes needs to be a number or an uppercase letter (i.e. chr1, chrA1, chr1A).

Here is an example of the GFF file format I am trying to load Chr10ED85E zm.1.ed85e.fgjs 4573532 4577563 Chr10ED85E zm.1.ed85e.fgjt 4578936 4581199 Chr10ED85E zm.1.ed85e.fgju 4582450 4588256 Chr10ED85E zm.1.ed85e.fgjv 4591373 4593178 Chr10ED85E zm.1.ed85e.fgjw 4594233 4595951 Chr10ED85E zm.1.ed85e.fgjx 4598827 4601066

Here is am example of the collinearity file ## Alignment 8010: score=410.0 e_value=5.7e-21 N=9 Chr04ED85E&Chr06ED85E minus 8010- 0: zm.1.ed85e.cgqt zm.1.ed85e.djio 1e-89 8010- 1: zm.1.ed85e.cgrc zm.1.ed85e.djik 2e-174 8010- 2: zm.1.ed85e.cgrj zm.1.ed85e.djij 0 8010- 3: zm.1.ed85e.cgrw zm.1.ed85e.djhw 0 8010- 4: zm.1.ed85e.cgrx zm.1.ed85e.djhv 0

I think I am following the guidelines. Can you please advice?

Secondly, can you remove this restriction about the way chromosomes are named? For example I may want to use my data that is in the scaffolded format. Instead you can implement that the name of the chromosome has to be alphanumeric

Thanks Abhijit