Jorge Boucas

docker dev & test environment

10

Docker environment should allow development and testing of py4cytoscape and RCy3. It therefore needs: - [x] Jupyter notebook: python and R kernels - [x] R-Studio server - [x] Cytoscape (image...

runalltests.bat: stuck on test_open_app_store()

3

``` py4cytoscape:~/py4cytoscape/tests$ source runalltests.bat bash: nul: No such file or directory real 0m0.003s user 0m0.000s sys 0m0.002s Into test_get_app_information() Out of 'test_get_app_information' Into test_get_app_status() 'test_get_app_status' exception AssertionError("{'appName': 'boundaryLayout', 'status': 'File...

[BUG] fix local paths for nextflow pipelines

1

[example](https://github.com/mpg-age-bioinformatics/flaski/commit/e7b74283610ea970a4368db5553a46fa383346d3)

**App** cellplot **Describe the bug** ``` Exception on /storage/_dash-update-component [POST] Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/dash/_callback.py", line 480, in add_context jsonResponse = to_json(response) File "/usr/local/lib/python3.10/site-packages/dash/_utils.py", line 22, in to_json...

**App** RNAseq **Describe the bug** User was able to press submission twice which let to different file names: ``` 20230421.162259.0ulhoa99.RNAseq.xlsx 20230421.162317.6payrur_.RNAseq.xlsx ```

https://github.com/BSd3v/dash-chart-editor

**App** In venn ``` Exception on /venndiagram/_dash-update-component [POST] Traceback (most recent call last): File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 2525, in wsgi_app response = self.full_dispatch_request() File "/usr/local/lib/python3.10/site-packages/flask/app.py", line 1822, in full_dispatch_request rv =...

**App** scatterplot **Describe the bug** when colour is given and then removed an error occurs due to "" **Expected behavior** recognise as option not picked **Additional context** ``` scatterplot Traceback...

**Is your feature request related to a problem? Please describe.** check and report (raise exception) if there are duplicates on the rows or headers of the table