Jorge Aguilera
Jorge Aguilera
> Does this mean this bug won't be fixed? This would make configurations really unreliable if some of them are ignored. @replikation no, no, my comment was more as providing...
it seems only to happen in Mac and if git is not in `/usr/bin` in version 5 they only check if the file is present but from version 6 it...
As a PoC I've created this branch https://github.com/nextflow-io/nextflow/tree/2628-code-executed-using-exec-is-executed-outside-of-work-directory the idea is to inject the workDir into a ThreadLocal and use it in nextflow functions as `file` (as implemented in this...
yes, it's a known bug as a temporary workaround, you can try to declare the profile section firstly: ``` profiles { bar { process { withName:Foo { cpus = 14...
MemoryUnit has already a method to divide ('div' ) For example: main.nf ``` workflow { def max = params.max_memory as MemoryUnit def mem = (max - 1.GB ) / 2...
done after some errors in the pipeline due GitHub cache issue at the end, the pipeline ends ok
I think there are many projects migrating from RST to Antora (an asciidoctor toolchain to generate static sites) We don't have a lot of files to convert so probably we...
I think the problem comes at https://github.com/nextflow-io/nextflow/blob/master/modules/nextflow/src/main/groovy/nextflow/config/ConfigParser.groovy#L335-L341 because we are not taking into account when we are in a nested ConfigObject (stored in `profileStack`) I'll take a look to it
In the end, I think I've found the way to run all tests although it's a little tricky and probably we need to investigate deeper Don't know why/where if we...
Yes, I have it I'm reviewing it and trying to reopen the PR. Sorry for inconveniences