HistoPrep icon indicating copy to clipboard operation
HistoPrep copied to clipboard

Process images with more than 3 channels

Open maiskovich opened this issue 8 months ago • 0 comments

Hello, thank you for the great package.

I am trying to process images with 30 channels (CycIF) in tiff format.

I am running the examples provided in the readme, and I am getting back JPEG tiles with three channels. I assume that the first three channels of my images are being picked.

Is there a supported way to deal with these types of images? I was checking the backend definition files, and based on the use of OpenSlide, it seems that it will not be supported to use images with more than three channels (https://github.com/openslide/openslide/issues/42). Do we need to develop a new backend type for these images?

Thank you

maiskovich avatar Jun 03 '24 09:06 maiskovich