Jonathan Zheng

# Motivation The RMG website code is fairly large, and changes upstream in RMG-Py and RMG-database have the ability to affect functionality of the website. Some unit tests are already...

Add protonation functions

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### Motivation or Problem This PR adds several helper functions related to protonation & ionization. ### Description of Changes New "big" functions: * `uncharge_mol(mol, method)`: Input = charged molecule (ion...

[Docs] Update outdated docs, wiki, and contributor guidelines

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### Motivation or Problem This PR will serve as a hub to fix the various issues with currently outdated wiki/docs outlined in #2686. The current plan is to engage in...

[Docs] Update docs website with GitHub wiki info

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Related to larger issue of outdated docs in #2703. This PR serves to update [the GitHub docs](https://reactionmechanismgenerator.github.io/RMG-Py/) with the info from the wiki. See #2703 for checklist of pages remaining...

[Docs] Add CONTRIBUTING file with contributor guidelines

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Related to larger issue of outdated docs in https://github.com/ReactionMechanismGenerator/RMG-Py/pull/2703. This PR serves to consolidate contributor guidelines in a `CONTRIBUTING.md` file [as described here.](https://docs.github.com/en/communities/setting-up-your-project-for-healthy-contributions/setting-guidelines-for-repository-contributors)