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Published 20 hours ago • verified publisher icon jonescompneurolab

GUI plotting observed data on PSD plot

Open gtdang opened this issue 1 year ago • 4 comments

Ability to plot observed data PSD over simulated data PSD

Section 5 - Figure 17 of the Alpha/Beta tutorial (see below) shows how to compare PSD between simulated and observed data. The observed data PSD is added to the existing plot with std error bounds. This feature should be added to the new GUI.

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gtdang avatar Feb 20 '24 22:02 gtdang

This is a problematic feature to add ... actual data will have 1/f ... unless you remove that somehow, it's not easily comparable. @rythorpe @ntolley any accepted way how jones lab addresses this?

jasmainak avatar Apr 02 '24 07:04 jasmainak

Added the figure from the past tutorial in the description for reference. Curious how this was handled with the previous GUI?

gtdang avatar Apr 02 '24 14:04 gtdang

The empirical PSD must have been normalized somehow, though I'm not sure what convention was adopted in the old GUI. @jasmainak makes a great point that this is a can of worms we probably don't want to open because it is very data-specific. I think we should push users who want to do this sort of analysis to use scripting + the hnn-core API so that they can pull in other signal analysis toolboxes on their own.

rythorpe avatar Apr 02 '24 17:04 rythorpe

Can I close this issue as "wontfix"?

gtdang avatar Sep 10 '24 18:09 gtdang