Jon Ison

Statistical / learning methods & DSEO

4

These are used by DSEO (https://docs.google.com/spreadsheets/d/1ix1eKplAX9KHbBsA6uU7G95_7lD5Q9jGfEL_LV7dYAQ/edit#gid=1477753083) and we could model them in EDAM: - *Unsupervised learning* - *Ensembl learning* - *Neural networks* - *Recommender system* - *Probabilistic graphical model* (EDAM...

Propose to merge "DNA mutation" and "DNA polymorphism"

1

These are often used interchangeable or are confused, so I think in EDAM we're splitting hairs to be including both [DNA mutation](http://edamontology.org/topic_2533) and [DNA polymorphism](http://edamontology.org/topic_2885). see e.g. https://www.researchgate.net/post/What_is_the_difference_between_polymorphism_and_a_mutation and https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4502642/...

Proposed merge of "Phylogeny" & "Phylogenetics" topics

1

Propose to merge [Phylogeny ](http://edamontology.org/topic_0084) and [phylogenetics](http://edamontology.org/topic_3293) They're used interchangeably (and inconsistently) in _bio.tools_ thumbs up/down for approval @matuskalas @veitveit @hmenager @hansioan

edamverify clean-ups: Bad non-boolean value

1

see https://github.com/edamontology/edamverify/blob/master/queries/badNonBooleanValue.ipynb

edamverify clean-ups: Disallowed synonym

1

see https://github.com/edamontology/edamverify/blob/master/queries/disallowedSynonym.ipynb

edamverify clean-ups: Subset misuse

1

see https://github.com/edamontology/edamverify/blob/master/queries/subsetMisuse.ipynb

see https://github.com/edamontology/edamverify/blob/master/queries/annotationDeprecationMisuse.ipynb

Post from Michael Crusoe on Debian list is below. Would a biotoolsSchemaCTD shim be useful? Package: wnpp Severity: wishlist Owner: Debian Med team * Package name : ctdconverter Version :...

Information mapping, gap analysis & schema revision

4

Mapping of tool information from different projects (to be integrated) with gap analysis for anticipated information requirements, followed by revision of [biotoolsSchema ](http://github.com/bio-tools/biotoolsschema) to support integration of new data where...

Data dump to GitHub

22

_From @joncison on September 4, 2018 11:27_ Nightly dump of all content (in XML and JSON formats?) to GitHub, as a convenience (or least to begin, just a one-off dump)...