Jonathan Fischer

Is there a reason the samplers generate row instead of column matrices? Julia is column major

1

The AbstractSamplers generate matrices where data is organized by row instead of column. So when a user writes a parallelized objective function for example, they must iterate by row: ```julia...

Issues from encapsulating `State` in `Algorithm`

2

## Issue - The `Algorithm` structure currently holds a `State` object. This design is counterintuitive as `Algorithm` should ideally represent static parameters, options, and optimization criteria, while `State` should hold...

Lack of Error Highlighting in Function Trace on Ubuntu 20.04

9

## Description - I am experiencing an issue with the Julia extension for Visual Studio Code on Ubuntu 20.04. - When running a Julia file line by line with the...

`remake` doesn't recompute conservation law constants

1

### Made a comment on @TorkelE 's issue here that I'm making a seperate issue about: "Was just about to make an issue related to this, it's a particular problem...

`remake` doesn't evaluate interdependencies between `u0` and `p`

6

### Made a comment about this in `Catalyst.jl`: "Was just about to make an issue related to this, it's a particular problem when using `remake` to update the initial conditions...

The section in the FAQs docs is incomplete, here: https://juliareach.github.io/ReachabilityAnalysis.jl/dev/man/faq/#Can-I-use-ODE-solvers-with-interval-initial-conditions?:~:text=%22y%22)-,Modeling%20questions,Although%20it%20is%20in%20principle%20possible%20to%20ODE%20solvers%20for,-How%20do%20I 

Allow symbolic indices to be passed to the `save_idxs` kwarg of `solve`

1

## Can't use symbolic indices to parameterize `solve(;save_idxs = ...)` - Often I want to just save an **observed** variable when solving an `ODEProblem`, to save on memory during large...

Page below is completely static, which I assume was an unintended regression. https://docs.makie.org/v0.21/ecosystem#Beautiful-Makie Thought I'd mention it. New docs look great by the way! 

### Add `xscale`, `yscale`, `zscale` keywords to `Axis3` Would like to be able to scale the x,y, and z axes of an Axis3 object using a `scale` kwarg, similar to...

Warning & Error when calling `interactive_orbitdiagram`

3

# Problem ### Calling `interactive_orbitdiagram` on a system `ds` first outputs this deprecation warning (just need to replace fig size kwarg): ```julia ┌ Warning: Found `resolution` in the theme when...