jon-xu

Hi Marcus, In my last successful run, I set --num-reads 10000. This time the model training step ran for a week for my full dataset and only finished 4 epoches....

I'm now running it with 32 cores, and it's about 5 hours for one epoch, which might give me 30 epoches after the job time runs out.

Hi Marcus, I've finished 30 epoches training and had some inferred data for the unmodified sample. The class_pred are 0 for all listed bases which means they are unmodified. Then...

Thanks Marcus! Yes it's RNA modified base. Interestingly, we can still detect modified bases using Remora - the inference result on signal mapping file of the modified sample consists mostly...

I guess if we can find a metric describing the diversity of the C groups, we can try different C's and find the elbow point as the optimal C... -...

Hi, 1.3 Million looks a bit too many for me. And this should be the reason of long running time. Cheers, Jon On 10 Nov 2023, at 19:47, IBDgenomics ***@***.***>...