simplifyEnrichment issues

allow self-defined text in textbox annotations

also support it in the shiny app.

Allow additional Heatmaps to be passed to `export_to_shiny_app`.

It'd be excellent if `simplifyGOFromMultipleLists` was compatible with the shiny app function, either by returning a list of the heatmaps generated and passing to `ht_shiny` or via the `export_to_shiny_app` function...

j-andrews7

enhancement

Problem with using function simplifyGOFromMultipleLists

Hi Zuguang, thank-you for developing this great package. I have multiple GO lists from different gene clusters and I am interested in comparing them. I have difficulty using the simplifyGOFromMultipleLists....

BBJamge

to-do list (mainly for text analysis)

1

- [ ] n-gram, (e.g. cell cycle) - [ ] words (or abbreviations) with two letters, or to distinguish abbreviations that are the same as normal words, but all in...

jokergoo

cluster heatmap looks weird

1

Hi Zuguang, thank you for developing great R package! I'm just running your vignette with random 500 GOterm IDs, and but it gives me weird heatmap. >library(simplifyEnrichment) >set.seed(888) >go_id =...

xcliu-oc

not found simplifyGOFromMultipleLists function

1

After I library the package simplifyEnrichment, the R notes me not found simplifyGOFromMultipleLists function, what can I find the function simplifyGOFromMultipleLists

cao523

Usage of anno_word_cloud

1

Hi, thanks for creating such a great series of packages. When I tried to create word_cloud for the heatmap ``` term

hsiaoyi0504

Retrieving the similarity values

1

Hi @jokergoo, Thanks for this very useful package! I was wondering if there is an easy way of retrieving the "Block mean" values that is described in the vignette? Best,...

ttumkaya