simplifyEnrichment

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jokergoo

Hi, I'm trying to increase the size of the word cloud with the function anno_word_cloud_from_GO(), using the argument "size" anno_word_cloud(), but I can't make it work. this is the command...

ALbpASC

Hello, I hope all is well! I am using `GO_similarity` to compute a similarity matrix but am getting the following error. ``` Error in (function (ID1, ID2, semData) : tcssdata...

lillianhorin

Error simplifyGOFromMultipleLists() version 1.8

1

Dear simplifyEnrichment team, I am trying to use the simplifyGOFromMultipleLists() function of package version 1.8.0, but I get the following error: Error in apply(mm[index, ], 2, function(x) sum(x >= transform(padj_cutoff)))...

IrSoler

Hey thanks for the very nice package. I would like to get the data that is used to plot the barplots in compare_clustering_methods so I can let a script automatically...

je71xusa

Assign a representative GO term to each cluster

3

Hi jokergoo, thank you so much for developing such useful R packages! I have been using semantic similarity to cluster enriched GO terms before but this package makes it much...

eggrandio

Error in getFromNamespace

1

when df

sonoko97

``` mat = matrix(rnorm(100*10), nrow = 100) split = sample(letters[1:5], 100, replace = TRUE) term = lapply(letters[1:5], function(x) { data.frame(c("This is the first sentence.", "This is the second sentence."), c(1,...

l-magnificence

Hi, I am trying to add annotation information to the heatmap. I have GO terms that are observed from a specific condition and want to visualize specific terms are observed...

harimchun

Thanks for making this package. I am using version 1.7.2 of `simplifyEnrichment` from Github. I saw [this pull request](https://github.com/jokergoo/simplifyEnrichment/pull/57) that suggests there is functionality in this package to retain spacing...

yaaminiv