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Published 20 hours ago • verified publisher icon jokergoo

Ontology for simplifyGOFromMultipleLists

Open brovolia opened this issue 2 years ago • 1 comments

Hi jokergoo,

thank you for the awesome package! I have an issue with simplifyGOFromMultipleLists() It looks like it doesn't work with ont argument. Please, take a look on output below

dif_semsim_clust_both_GO_MF_t <- simplifyGOFromMultipleLists(dif_semsim_GO_MF_t_df, padj_cutoff =0.05, ont = "MF")

Use column 'ID' as go_id_column. Use column 'p.adjust' as padj_column. 714/714 GO IDs left for clustering. You haven't provided value for ont, guess it as BP. Cluster 714 terms by 'binary_cut'... 22 clusters, used 0.9863231 secs.

brovolia avatar Sep 22 '22 12:09 brovolia

I've made a mistake and gave a df with BP GO terms. That is why the program recognized the list as BP.

brovolia avatar Sep 22 '22 13:09 brovolia