How to get the combinations of cluster partitions with row partitions (gene sets)

[smk5g5]

Hi,

Thank you for this great tool. I was wondering what is the best way to get gene sets associated with a particular subgroup.

Ideally, I would want the gene sets associated with the particular subgroup from above. e.g. Cluster 4 p1 has unique features in row cluster 4 which also overlap with p9 I would ideally want to get unique gene sets for each of these subgroups. I would also want to extract them from the heatmap as list indices of (split)

Currently get_signatures(res, k = 9, scale_rows = FALSE) does not allow to split the row and columns which makes it easier to extract these gene sets (unique to a subgroup/s) and do set operations to extract unique gene sets or gene modules that define this data well. How would you go about doing the above.

Kindly let me know.

Thank you!