circlize

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Is there any way to overlap ribbons?

1

I want to overlap ribbons like this  I know `circos.link()` can do it. but this function need input sector and positions . So is there any way to overlap...

jianlinyang

Hiding chromosome sector on single genomic track

1

Dear Jokergoo, thank you for this awesome package. I'm trying to make a modified version of the 'relation between pathways and genes' plot you describe here: https://jokergoo.github.io/2020/11/27/visualize-relations-between-genes-and-pathways/ I would like...

kitscorp

the radius of the circle

2

How to customize the radius of the circle in circlize

ryrl9703

Problem installing circlize

1

Here the code and error message. Can anybody help me pls? > install.packages("https://cran.r-project.org/src/contrib/circlize_0.4.15.tar.gz", repo = NULL) trying URL 'https://cran.r-project.org/src/contrib/circlize_0.4.15.tar.gz' Content type 'application/x-gzip' length 2497140 bytes (2.4 MB) ================================================== downloaded 2.4...

marre1991

try to do this

1

Dear author Your package circlize is so great and functional. Can this package achieve the same function as the picture below? Thanks a lot  

zhipengliux

Points out of plotting region with circos.barplot

3

I am using circos.barplot to plot methylation data across four chromosomes (data found [here](https://github.com/yaaminiv/killifish-hypoxia-RRBS/blob/main/output/05-analysis/methylation-landscape/NavgMethNormCircos.tab)): ``` circos.clear() #Create a blank circos plot col_text

yaaminiv

Sector colors

1

Hi, I am trying to plot a circular heatmap with 5 categories ( 5 sectors). Is there a way to assign different colors to different sectors while still having color...

syuxuan

Change default canvas background color

1

I wonder if there is a way to change the default background color (canvas color) of the circular plot. For example: This is the original figure:  By changing the...

JingxuanBao

Please provide example datasets and the code you use. It will help me to understand your problem and help you!

jokergoo

hello. I have a circular bacterial genome and I would like to map the contigs of an available genome assembly from a database to my circular genome. I have a...

jonaskohh