circlize

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Thanks for the great work here, I was wondering if `circos.labels()` could read preAllocated tracks from `chordDiagram`. In the example you showed if the `side` is outside, we need to...

m3hdad

error: could not find function "cm_y"

1

I just learn the example on https://jokergoo.github.io/circlize_book/book/introduction.html#principle-of-design, chapter 1.2. my code: library(circlize); set.seed(999); n = 1000; df = data.frame(sectors = sample(letters[1:8], n, replace = TRUE), x = rnorm(n), y =...

ShuqingL

Any way to overlap rectangle plot and density plot in same track?

1

Want to overlap density plot and rectangle plot in the same track, like this :  tried to use circos.genomicTrack and panel.fun but seems they are not compatible

rpugho

Standardising width of links irrespective of track size

1

Hi. Is there a way of standardising the width of the links (type: big arrow) so it is the same for all links irrespective of the track size? When I...

nhgopee

genomicDensity()

1

If a previous genome-circular plot is made and next call `genomicDensity()`.

jokergoo

Please provide example datasets and the code you use. It will help me to understand your problem and help you! Error: Length of data and length of factors differ. Chr...

isunshine-cc

circos.lines within the circos.genomicTrack command does not draw lines in all tracks

2

Hi, I am using your R package, which is quite nice, but I am facing a small issue. I want to draw a genome with tracks. For this I was...

Luker121

circos.genomicLabels perpendicular to line

1

Hi Jokergoo, Is there a way to place the labels passed in circos.genomicLabels to appear perpendicular to the connection line? regards

ghs101

Adding a unique sector with axis labels

2

Thanks so much for this package. The interactivity of the R interface is game changing for my ability to learn/make these plots. I am comparing two genome assemblies, one that...

sarahfrail

circos.par is not working

7

Hello, I amable to change the parameters of circos.par$track.height (and others as well) and I can verify that I have changed them, but they are not working. Even if I...

tuntscha