Joseph Watson/Watchwell

icon company Baker Lab, Institute for Protein Design icon location Working on generative models for protein design

Results 12 comments of Joseph Watson/Watchwell

Carbonic Anhydrase (5yui) active site modelling

This looks good to me! If you have a substrate in there, you could use the substrate contact potential - there's an example in the 'design_enzyme' example script!

How to generate many confirmation from a given PDB or sequence?

So I think your input here isn't doing what you want. The 'contigmap.contigs=[20-20]' input is saying "Make me a random 20 amino acid protein", so the "cleaned.pdb" file isn't being...