Joel Martin

I don't think it should handle that, sort them first. asking mpileup to sort them automagically could cause quite an unexpected load when it's hundreds of bams. Joel On Thu,...

I have the problem with either age repository when -O3 is added ( or -O or -O2 ) make clean && make ./test.sh occasionally it will make it through one...

Yep that works. wall was giving AGEaligner.cpp:911:0: warning: ignoring #pragma omp shared [-Wunknown-pragmas] AGEaligner.cpp:1027:0: warning: ignoring #pragma omp shared [-Wunknown-pragmas]