TBProfiler
TBProfiler copied to clipboard
Collate issue
b-profiler collate
[04:57:16] INFO Using ref file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.fasta db.py:594
INFO Using gff file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.gff db.py:594
INFO Using bed file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.bed db.py:594
INFO Using version file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.version.json db.py:594
INFO Using json_db file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.dr.json db.py:594
INFO Using variables file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.variables.json db.py:594
INFO Using spoligotype_spacers file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.spoligotype_spacers.txt db.py:594
INFO Using spoligotype_annotations file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.spoligotype_list.csv db.py:594
INFO Using bedmask file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.mask.bed db.py:594
INFO Using barcode file: /home/p0129674/anaconda3/envs/my_pro/share/tbprofiler//tbdb.barcode.bed db.py:594
0%| | 0/1 [00:00<?, ?it/s]
Traceback (most recent call last):
File "/home/p0129674/anaconda3/envs/my_pro/bin/tb-profiler", line 562, in