joannawolthuis

Hi there! Thanks for your interest and apologies for the inconvenience. Would you mind trying the install.metshi in the 'dev' github branch? I need to update the master branch asap,...

Hi there, happy that helped! Was there any more output? :O perhaps specific libraries required by the MetaboAnalystR package? The docker version is also an option perhaps, it may save...

Hi Dirowa! Thanks for your interest :) I'm currently working on a **major** update to R 4.0 which should address most concerns, will message you here once it's up! If...

Hi there :) Thank you for your interest in MetShi! Can you confirm if you're on the master branch or dev branch? If you're on the master branch, please give...

Ah, I see! I'll double check, strangely I haven't had issues but perhaps it's a recent change to SSPA. Docker (dev branch preferably) should work fine. :)

Hi @stolltho ! Thanks for your patience - I've been off for the last while and am returning to work now. Can you check your /databases/hmdb_source folder if there is...

Hi! That is strange, it means the download failed.. Did you try multiple times? And are you working from the docker image or native R (in windows?)

Hi there! Thanks for the log. It seems that some updates are needed on the database parsing area, which I'm working on now (on a Windows machine) :) Java in...

Hi! I pushed an update that should fix all the bugs that I could reproduce (the ones you posted except the HMDB download failing), can you take a look? :)

Whoops, what I meant is please update the MetaDBparse package through `devtools::install_github("joannawolthuis/MetaDBparse")`