TypeError: __init__() got an unexpected keyword argument 'n_jobs'; ValueError: Invalid vmin or vmax

[LHXqwq]

An error occurs when I run the following code： scHicClusterMinHash -m raw_normalized.scool --numberOfHashFunctions 1200 --numberOfClusters 7 --clusterMethod kmeans -o clusters_minhash_kmeans.txt --threads 20

2022-12-23 16:06:01.484465: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. 2022-12-23 16:06:01.651899: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory 2022-12-23 16:06:01.651934: I tensorflow/compiler/xla/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine. 2022-12-23 16:06:02.484702: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer.so.7'; dlerror: libnvinfer.so.7: cannot open shared object file: No such file or directory 2022-12-23 16:06:02.484799: W tensorflow/compiler/xla/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer_plugin.so.7'; dlerror: libnvinfer_plugin.so.7: cannot open shared object file: No such file or directory 2022-12-23 16:06:02.484811: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Cannot dlopen some TensorRT libraries. If you would like to use Nvidia GPU with TensorRT, please make sure the missing libraries mentioned above are installed properly. Traceback (most recent call last): File "/home/lihaoxing/miniconda3/bin/scHicClusterMinHash", line 7, in main() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/schicexplorer/scHicClusterMinHash.py", line 299, in main cluster_object = KMeans(n_clusters=args.numberOfClusters, random_state=0, n_jobs=args.threads, precompute_distances=True) TypeError: init() got an unexpected keyword argument 'n_jobs'

Another error occurs when I run the following code： scHicPlotClusterProfiles -m raw_normalized.scool --clusters clusters_svl_spectral.txt -o clusters_svl_spectral.png --dpi 300 --threads 20

Traceback (most recent call last): File "/home/lihaoxing/miniconda3/bin/scHicPlotClusterProfiles", line 7, in main() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/schicexplorer/scHicPlotClusterProfiles.py", line 330, in main cbar = plt.colorbar() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/pyplot.py", line 2065, in colorbar ret = gcf().colorbar(mappable, cax=cax, ax=ax, **kwargs) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/figure.py", line 1277, in colorbar cb = cbar.Colorbar(cax, mappable, **cb_kw) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/_api/deprecation.py", line 384, in wrapper return func(*inner_args, **inner_kwargs) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 380, in init self._reset_locator_formatter_scale() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 1165, in _reset_locator_formatter_scale self._process_values() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 1099, in _process_values self.norm.vmin, self.norm.vmax = mtransforms.nonsingular( File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colors.py", line 1249, in vmin self._changed() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colors.py", line 1277, in _changed self.callbacks.process('changed') File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 312, in process self.exception_handler(exc) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 96, in _exception_printer raise exc File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 307, in process func(*args, **kwargs) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/image.py", line 326, in changed cm.ScalarMappable.changed(self) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cm.py", line 683, in changed self.callbacks.process('changed', self) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 312, in process self.exception_handler(exc) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 96, in _exception_printer raise exc File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/cbook/init.py", line 307, in process func(*args, **kwargs) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 495, in update_normal self._draw_all() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 530, in _draw_all self._process_values() File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colorbar.py", line 1103, in _process_values b = self.norm.inverse(b) File "/home/lihaoxing/miniconda3/lib/python3.9/site-packages/matplotlib/colors.py", line 1708, in inverse raise ValueError("Invalid vmin or vmax") ValueError: Invalid vmin or vmax

[joachimwolff]

Please check if your installed dependencies have the same version number as the ones listed in requirements.txt. I fear that some dependency updated their API and that leads to that it is broken now.