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Published 20 hours ago • verified publisher icon jmzeng1314

Q

Open SimonHuo opened this issue 3 years ago • 1 comments

In the GEO/airway_RNAseq/kegg_and_go_up_and_down.R, the kk=DOSE::setReadable(kk, OrgDb='org.Hs.eg.db',keytype='ENTREZID') should change into kk=DOSE::setReadable(kk, OrgDb='org.Hs.eg.db',keyType='ENTREZID'). Or, the code will be wrong.

SimonHuo avatar Apr 17 '21 05:04 SimonHuo

As the result of the default metaset，the last go analysis, go <- enrichGO(gene_down, OrgDb = "org.Hs.eg.db", ont="all") , did not have the result because of the default p value.

SimonHuo avatar Apr 17 '21 05:04 SimonHuo