Mike Tyszka

Hi @oesteban Looks like fmriprep 20.2.1 LTS is really close to supporting TOPUP SDC right now. Just working through the dependencies, sdflows 2.0.x has the TOPUP workflow in place, but...

Fantastic news! Like @jxvansne this would be a game changer in our lab too.

Fantastic and thanks for all your work implementing this. We'll try 21.0.0 out shortly - fingers crossed topup fixes the OFC issues.

@hippocampo Glad you're finding bidskit useful! Making the protocol translator dynamically updatable is a great idea and I'll implement it as soon as I can. Stay tuned.

Hi @ChristineFarrugia. At first glance, your protocol translator looks fine. Would you be able to share a deidentified minimal version of your DICOM sourcedata? Only include 5 or so images...

Should be fixed now and I've added some handling for deidentified DICOM data without the AcquisitionTime tag. v2022.10.13 has been pushed to PyPi and can be installed using pip install...

Hi @hbaagil Looks like are a couple of things going on with the protocol translator setup, but first things first, which version of bidskit and dcm2niix are you using? Let...

For the RL and LR encoded rs-fMRI runs, I'd put both of them in the func folder and add dir-RL and dir-LR to the BIDS file stubs in the Protocol_Translator.json,...

Try upgrading bidskit to v2022.10.4, clearing your work and sub-* folders and re-running bidskit. Looks like the TaskName field in the JSON sidecars hasn't been filled. Let me know how...

Sorry for the slow response and this might be too late to be useful.Probably the first thing to do is check whether ScanningSequence is present in the JSON sidecar for...