bidskit
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jmtyszka
Utility functions for working with DICOM and BIDS neuroimaging data
**Bug** I cannot debug bidskit while attempting to understand some errors. **To Reproduce** 1. Go to '$HOME/bidskit/bidskit' 1. Run `python __main__.py` 1. See error: ``` /home/algo/libs/bidskit/bidskit/__main__.py:38: DeprecationWarning: pkg_resources is deprecated...
Hello, When using bidskit in Windows, an issue with the IntendedFor path occurs. As the code is using the `os` package, the IntendedFor field is filled with a path in...
Hi, We are currently trying to process some data with BIDSKIT but are unsure on how best to structure it. The data consists of the following series: - An anatomical...
Hi ! I think .bval and .bvec files don't get exported unless the file name for the diffusion sequence finishes with 'dwi'. If I set the following in the Protocol_Translator.json...
Hi, I have been using bidskit to process scans for last couple of months. I have older version of bidskit that works as intended so I tried using the latest...
Hi, The first pass ran well and I got the .niigz and .json files (see the first screenshot). I then edited the protocol translator (see the second screenshot). However, the...
Hi, The first step (converting DICOM to NIFTI) run well but my nii.gz files in the work folder got the complete name of the subject as ID. How can I...
https://readthedocs.org/projects/bidskit/ is broken/empty...there is only a stub.
Hi there, I have three reverse blip data files: ```_PA--e1.nii```, ```_PA--e2.nii```, and ```_PA--e3.nii``` in the working directory. In the protocol, I set the type to "fmap" and the description to...
