tfmodisco-lite

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Generate basic report with out meme comparison

13

Hi! I am using tf-modisco lite on data generated using chrombpnet. I generated the modisco.h5 file and want to now generate the report. Is it still possible to generate the...

kaillahs

necessity for the calling of use("pdf")

5

https://github.com/jmschrei/tfmodisco-lite/blob/3c6e38f3ad5df80c55bd4e8c7c2a531ee0a2b316/modiscolite/report.py#L11C1-L12C22 Hi, thank you for creating this easy to use and fast version of modisco, I wonder what's the reason for calling .use("pdf") here, to provide some background. I was...

ruochiz

Fix bug in gapped kmer

3

Hello @jmschrei, I had issues in the function that computes scores for the gapped kmers: `_extract_gkmers` in `_seqlet_to_gkmers`. It seems that if there is less gapped kmers extracted than the...

thomasopsomer