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Published 20 hours ago • verified publisher icon jmschrei

No motifs found

Open SalimMegat opened this issue 2 years ago • 1 comments
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Hi,

I have tried to run modisco-lite on some of my sequences but unofortunately I do not get any motifs back. I have tried to generated a one-hot encoded sequences and numpy array from both the sequences and the hyp important score from my gkm-svm run but I got no results. Attached you'll find both npy files that I used as input. Also I used the fasta and score generated on the TF-modisco repo to make numpy array for modisco-lite and I also do not get any significant motif back. Am I doing something wrong ? Many thanks !

Best,

Salim. Archive.zip

SalimMegat avatar Feb 07 '23 15:02 SalimMegat

Can you provide the command you're using to run it?

jmschrei avatar Feb 10 '23 17:02 jmschrei