John Eppley

Using mamba to install bioconda packages on an M2 mac, I ran into the problem where packages only exist for the older intel architecture. The system can use those, but...

This update: * fixes issues with the latest snakemake (version 8) (Issue #13) * fixes dependency issues with the umap environment

fastpathz cannot traverse the network: TypeError: no path to target

2

Running phanotate on some phage gives me this error. The below is from [Hubei odonate virus 11](https://www.ncbi.nlm.nih.gov/nuccore/NC_032956): ```bash (phan.env) [jmeppley@tyrosine phanotate]$ phanotate.py -o test/NC_032956.ncbi.faa -f fasta test/NC_032956.ncbi.fasta /mnt/data0/jmeppley/projects/nanopore_biller/viemes_by_depth/phage_clusters/phanotate/phan.env/bin/phanotate.py:4: DeprecationWarning: pkg_resources...

wildcard_constraints not honored by glob_wildcards

1

**Snakemake version** 5.19.3+20.g0a55f335 **Describe the bug** Wildcards values returned by glob_wildcards() include values that do not match the global wildcard_constraints. **Minimal example** Snakefile: ``` wildcard_constraints: filename=r'file_.+' filenames, = glob_wildcards('{filename}.txt') rule...