About pbmc3k data in Sanity

[millersan]

Dear authors, Please accept my sincere thanks for providing such a useful tool. Could you provide a vignette about the Sanity using in Seurat or Scanpy? I have tried the pbmc3k data, but it looks like all values are negative numbers, so it can't load by the Seurat pipeline. Best, Miller

[ptdtan]

The values might be in log scale. Did you try to exponential the values before import those to Seurat?

[maximelepetit]

I think you need to load the normalize matrix (with negative values) to the "data" slot in Seurat object. It work for me with another dataset .

[millersan]

I think you need to load the normalize matrix (with negative values) to the "data" slot in Seurat object. It work for me with another dataset .

The values might be in log scale. Did you try to exponential the values before import those to Seurat?

Thanks a lot!

[maximelepetit]

see #17