John Marshall

Please don't close your issue. Various BWA users have been asking @lh3 what the **-M** option might be still useful for for quite some time — see #26, #96, and...

This has been tested on x86-64 macOS and on aarch64 Debian GNU/Linux 11 (bullseye) (on a Raspberry Pi). The scalar version has been tested on both of those platforms. Thanks...

This has now been tested on a big-endian host (namely s390x), where (for this PR's test set of 10,000 reads) it produces the same output as the PR on other...

Glad to be of service! :smile: If you were going to make a new release, it would be vital to also merge either #345 or #348 (the latter would be...

Python/Cython is reasonably easy — have a look at [my draft for pysam](https://github.com/jmarshall/pysam/actions/runs/829565579/workflow). Perhaps set up your Cython test build as a separate job from the C compilation ones. But...

Me, I don't see a reason to continue to trust the Travis company. So to the extent that the non-x86 parts of the existing _.travis.yml_ can be moved to _.com_...

[This is increasingly off-topic for minimap2.] IMHO the [writing was on the wall](https://news.ycombinator.com/item?id=18978251) for Travis CI GMBH [two years ago](https://news.ycombinator.com/item?id=19218036). More recent events have only confirmed this assessment, sadly.

See also PR #359.

Fixed in 2.21.

Crossposted to [biostars](https://www.biostars.org/p/9521965/). You need to apply 2a1ae7b6f34a96ea25be007ac9d91e57e9d32284 from #267. And BWA needs a new release that actually compiles with current compilers, but several outstanding PRs should be merged before...