The fasta file for metagenome I should choose

[xuanji2017]

Hi I am really interested in your R package gRodon. I am checking the potential to use it in metagenomics data. In metagenomic mode, should I use MAGs as genome fasta input? Thanks a lot!

Best,

[jlw-ecoevo]

You can use either MAGs or assembled metagenomes - although be sure to read the doumentation as the settings you should use for each and their interpretation are different