Jens Luebeck

Hi BW, This is a very good question, and @virajbdeshpande may better be able to answer, but I believe it occurs when the edge connects to something outside the focally...

@virajbdeshpande - Hi Viraj, I have some changes waiting for merging. When you are able would you be able to take a look? I have resolved the merge conflicts already....

Hi Keren, This reconstruction ordering is equivalent to 0+,13+,83-,105+,139-,0- The incorrect formatting is a bugfix that will addressed in the upcoming official update of AA. Please let me know if...

Hi Jian, Thank you for reaching out about this. I need a bit more information to try and debug this. For instance, how can I reproduce the outputs for the...

Hi Jian, The older version of the tools uses a non-deteministic random seed for downsampling. Since 1.3 and on it has been deterministic. That could theoretically cause the issue. I'm...

Hi, I have updated PrepareAA to handle issues related to permissions of the output directory in [580f923](https://github.com/jluebeck/PrepareAA/commit/580f9233fb0002afaf6ffca8d31a9a9e86d6d420) and also consolidate a file from AmpliconClassifier that may be trying to write...

Thank you, this is a good suggestion, I will incorporate it. On Thu, Jul 28, 2022, 4:17 PM MrDotOne ***@***.***> wrote: > Pulled and running, it will take over 20hours...

Hi, Thank you for sharing. I have also now done some testing on my end and it appears that assigning a custom user for the image [is non-trivial](https://jtreminio.com/blog/running-docker-containers-as-current-host-user/) and that...

Hi Michael, Without re-assigning user IDs inside the container itself or alternatively sharing the /etc/passwd file from the host machine with the docker image, there is no way to provide...

Glad to hear it is working for you. Reopening issue for others who may run in to issues despite this fix. I will note that this solution works as long...