Jan Kosinski comments

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                                            Jan Kosinski

The provided environment yaml for SE3nv installs pytorch-cpu version, when the installed cuda version is not 11.1

I had it too when I played with this and it could be fixed by either re-ordering packages in SE3nv.yml or using mamba instead of conda.

The provided environment yaml for SE3nv installs pytorch-cpu version, when the installed cuda version is not 11.1

Unfortunately I can't recall what was the order that worked. Try different orderings or just install mamba.

How to save time to predict multimer structure by reusing previous monomer structure results

Funny, we have been just discussing this to speed up AlphaPulldown ;-) In the simplest way of implementing it, you should be able to do this by providing precalculated monomeric...

can colabfold be used to predict loops while leaving the remaining of the protein untouched?

think I have seen a similar FileNotFoundError when the template file name contained upper case letters. Can you change to lowercase? Maybe also you need to rename to four characters...