Jennifer Marx

Results 31 comments of Jennifer Marx

Need to follow-up. This data set has a pre_isa_archive_uuid and a file_store_item.datafile, but is not an isatab. Thoughts on how to distinguish isatabs further?

Solr logs ``` Caused by: org.apache.solr.common.SolrException: Plugin init failure for [schema.xml] fieldType "edge_ngram": Plugin init failure for [schema.xml] analyzer/filter: Error loading class 'solr.WordDel imiterGraphFilterFactory'. Schema file is /srv/refinery-platform/refinery/solr/core/conf/schema.xml at org.apache.solr.schema.IndexSchema.readSchema(IndexSchema.java:596)...

@gmnelson I'm not seeing this issue on https://test.stemcellcommons.org/dashboard/

Response ``` Error 500 {msg=SolrCore 'core' is not available due to init failure: Could not load conf for core core: Plugin init failure for [schema.xml] fieldType "edge_ngram": Plugin init failure...

Could not reproduce locally, commit 4d13dffbfe97a16ede6eaf055c8e600d57566a54 (pre-ubuntu upgrade)

- Taxon and model method species_to_taxon_id is use in the single_file_column_parser.py file. https://github.com/refinery-platform/refinery-platform/blob/4f56151021b1fa763a798b7c41bab523f80c4d92/refinery/data_set_manager/single_file_column_parser.py#L138 Need to follow-up.

I'd appreciate feedback on which option to implement.

@hackdna The user testing thus far aligns with option A.