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Analysis of a TMA

Open AlbertoFabbri93 opened this issue 1 year ago • 0 comments

Hi, it is my first time using CellChat and I was wondering what is the correct approach to analyze a TMA. I have the following slide as a single image in a Seurat object and I want to find the shared ligand-receptor interactions:

TMA_LU001FFP03_primary_diagnosis_highlighted

As of right now, I am analyzing the entire slide together. The problem is that I get a median cell to cell distance that is very high and I was wondering if this is going to affect the analysis. Should I analyze the entire slide together or should I split it into the individual stamps?

AlbertoFabbri93 avatar Jan 10 '25 13:01 AlbertoFabbri93