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netVisual_bubble() skips one of the LR pair
Hello,
I discovered one bug with netVisual_bubble()
I did the following code :
pairLR.use.up = data.frame("interaction_name" = "MIF_CD74_CXCR4")
netVisual_bubble(cellchat, pairLR.use = pairLR.use.up, sources.use = 4, targets.use = c(1:31), comparison = c(1,2))
Comparing communications on a merged object
Error in subsetCommunication_internal(net, LR, cells.level, slot.name = slot.name, : No significant signaling interactions are inferred based on the input!
The problem is that the interaction is present in my source... It shows up when doing
netVisual_bubble(cellchat, sources.use = 4, targets.use = c(1:31), comparison = c(1,2))