jingyu9603

CNVkit for RNA-seq: log2 in *.cnr file is all zero

3

I am trying to analyze RNA expression data using CNVkit. Here is the code I used: `cnvkit.py import-rna ./SRR8613811.txt --gene-resource ../ensembl-gene-info.hg38.tsv --correlations ~/softwave/cnvkit-0.9.10/data/tcga-skcm.cnv-expr-corr.tsv --output test2-summary.tsv --output-dir test2/` The sample read...