jimmyodonnell
Banzai without secondary indices
Seems like we run into an issue if you are not using secondary indices, as you need them to generate ID_COMBO in line 268 awk: illegal field $(), name "COLNUM2" input record number 2, file /Users/rgallego/Google_Drive/Kelly_Lab/Projects/Mesocosm_mtDNA_USGS/Data/18S_run_Sept2017/metadata_fix.csv source line number 2
Yeah, since we have only ever used data with two levels of indexes, I never expanded functionality to accommodate data with only a single level of indices. I can work on this.
Are you planning to use banzai in NMFS? Because you guys use Nextera indices, right? And with those, there is only 1 level of indexes
On 25 September 2017 at 13:44, jimmyodonnell [email protected] wrote:
Yeah, since we have only ever used data with two levels of indexes, I never expanded functionality to accommodate data with only a single level of indices. I can work on this.
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To date, I have dealt with this by hand on a per-issue basis, just to avoid additional changes to banzai.