zCall

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Hi, first of all amazing project. Could you please advise how to convert zcall output .tped and .tfam files, in the format of A,B alleles back to vcf format in...

gorawarashubham

How is 'example.bpm.csv' created?

2

@jigold great project. I am wondering where 'example.bpm.csv' shown in your example inputs folder is produced from? Is it an export from genomestudio or a product of autoconvert? Oddly enough...

brettvanderwerff

findMeanSD.py doesn't create output but no error message

4

When findMeanSD.py is executed, it creates a file which only contains a header but no additional lines. To make things more confusing, there are no errors given so I don't...

thjkral

Arguments are passed to dropSamplesFromReport.py through sys.argv: ``` python report = sys.argv[1] dropSamples = sys.argv[2] ``` However, next section expects use of the usual OptionParser approach used in the other...

jessicabonnie

jigold