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which file does dram-v need in virsorter2

Open mujiezhang opened this issue 3 years ago • 2 comments

I know that the dram-v needs the virsorter1 result file 'VIRSorter_affi-contigs.tab', but I do not find this file in virsorter2 results, so I wonder which file in virsorter2 result I can use as one of the input of DRAM-v? Sorry for my ignorance.

mujiezhang avatar May 21 '21 12:05 mujiezhang

Hi, you can use "--prep-for-dramv" option to get both the contig and affi-contigs.tab files required by dramv: https://github.com/jiarong/VirSorter2#dramv-compatibility

jiarong avatar May 21 '21 19:05 jiarong

oh, got it. Thank you very much!

mujiezhang avatar May 22 '21 09:05 mujiezhang