issue of --min-score

[sjhxy91]

hi dear jiarong et al, there is a question about 'min-score'. Can I use the score in output file 'final_viral_socre.tsv' to filter the min-score I want ? because I got all of score >0.5 's results when I run vs2 first time by the default --min-socre setting. Thanks~~

[jiarong]

Yes, you can filter the score table and pick filtered sequences in final-viral-combined.fa. It's the same as rerun with a different --min-score.

Also, there is a standard protocol for viral identification if you have not noticed in the doc: https://www.protocols.io/view/viral-sequence-identification-sop-with-virsorter2-btv8nn9w

[sjhxy91]

Yes, you can filter the score table and pick filtered sequences in final-viral-combined.fa. It's the same as rerun with a different --min-score.

Also, there is a standard protocol for viral identification if you have not noticed in the doc: https://www.protocols.io/view/viral-sequence-identification-sop-with-virsorter2-btv8nn9w

Thanks again jiarong