JIANHONG OU

try to restart the session and load the library. If it still not work, please let me know.

I think your installation may have some issue. Please try to reinstall it and reload the library.

How did you install the package? Could you please try to install the package via ```{r} BiocManager::install("jianhong/trackViewer") ```

Thanks for sharing the idea here. Most of the questions should be answered here: https://bioconductor.org/packages/release/bioc/vignettes/trackViewer/inst/doc/lollipopPlot.html If you have specific request, just let me know. Jianhong.

Hi, Thank you for reporting this bug. Please try *estimateLibComplexity(readsDupFreq(* *"/home/vip1/atac/align/ms3468-2.last.bam"**))* *in current release version.* *I will try to fix this soon.* On Tue, Nov 3, 2020 at 6:16 AM...

Hi Pichot, In the default setting of readBamFile, the bigFile is set to TRUE. That is to say it will not read the reads into memory at readBamFile step. So...

Hi pichot, Do you mind to share the head of your bamfile by samtools: samtools view -H bamfilename On Thu, Jan 30, 2020 at 8:31 AM pichot wrote: > Hi...

Your reads are paired ends or single ends? On Thu, Jan 30, 2020 at 8:31 AM pichot wrote: > Hi Jianhong, > > Yes I've try the shiftGAlignmentsList function but...

Then it is very strange because the package passed all the test platform for the vignettes. If I can not repeat your error, it is very difficult to debug. Jianhong....

Hi, Could you please confirm that you are using most closest released version of ATACseqQC? If it still get the same error, could you share your error? If you are...