JIANHONG OU

# Package 'Damsel' Review Thank you for submitting your package to Bioconductor. The package passed check and build. However there are several things need to be fixed. Please try to...

# Package 'Damsel' Review In current review, something about reuse the Bioconductor functions. Please try to answer the comments line by line when you are ready for a second review....

Could you please fix the error first? Thank you.

# Package 'BioGA' Review Thank you for submitting your package to Bioconductor. The package passed check and build. However there are several things need to be fixed. Please try to...

Hi Xiaoyu, Thank you for trying ATACseqQC to analyze your data. I am sorry for the late reply. Yes this is known issue. I will put it on my TODO...

Hi Both, Thank you for the informative discussion. Yes, you can try to clean your input bam file to decrease the memory cost. The thing is that, this make it...

Hi SergioRodLla, Even you changed the upstream and downstream value, I don't think current calculation results will meet the ENCODE results. You may also want to change the width parameter...

The bin size mentioned here: https://github.com/ENCODE-DCC/atac-seq-pipeline/issues/50#issuecomment-490999002

Yes, you are correct. when it set to 10bp, then both end will also set to 10bp. That is a bug. I may need to rewrote the function. I put...

Did you load `library(trackViewer)`? If yes, please let me know your trackViewer version by running `packageVersion("trackViewer")`.