Jonah Gabry

Clarify doc for `variable` argument to `extract_variable()` and `extract_variable_matrix()`

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#### Summary Very minor doc edit. Adds an additional emphasis to the doc that the `variable` argument must correspond to a scalar. Some confusion about this was brought up in...

Fix typo in _pkgdown.yml

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#### Summary closes #404, thanks to @ctholley Fixes typo in _pkgdown.yml #### Copyright and Licensing By submitting this pull request, the copyright holder is agreeing to license the submitted work...

We can't guarantee that `read_stan_csv` will work with CSV files generated by recent (or future) versions CmdStanR. This PR adds a note in the documentation to warn users about this....

Allow selecting subset of variables when using `as_cmdstan_fit()`

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#### Submission Checklist - [x] Run unit tests - [x] Declare copyright holder and agree to license (see below) #### Summary Adds `variables` argument to `as_cmdstan_fit()` to allow creating objects...

Use `include_paths` in subdirectories for pre-compiled models

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#### Submission Checklist - [ ] Run unit tests - [x] Declare copyright holder and agree to license (see below) #### Summary Fixes #1094. This does seem to fix #1094,...

Remove deprecated arguments and functions

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closes #409 #### Submission Checklist - [x] Run unit tests - [x] Declare copyright holder and agree to license (see below) #### Summary Removes deprecated arguments and functions in preparation...

CmdStanR 1.0 release

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It came up in [on the forum](https://discourse.mc-stan.org/t/stan-loading-parsing-issues-on-cran/38750) that CmdStanR not being at v1.0 gives the impression that the API isn't considered stable yet. @andrjohns @SteveBronder what do you think about...

We can use `base::numeric_version()`, `utils::compareVersion()`, or something similar when comparing CmdStan version numbers.