VirHostMatcher
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jessieren
VirHostMatcher: matching hosts of viruses based on oligonucleotide frequency (ONF) comparison
Hi Thanks for the tool! I ran the test command given in your readme file: But I encounter the following error: ``` Step 1: counting kmers for virus ABC.fasta ERROR...
Hi Ren: I am a phd student from SYSU, China. I have asked you some questions before and you are so patient to answer my questions. Now I have encountered...
Hi! I am getting the following error when using virhostmatcher and I am not sure why: head: ``` ERROR: zero bytes of file annotation Step 1: counting kmers for virus...
my total virus fasta file like the following: >k141_110471||full ATCTTTCTACTAAATATACATTTGATACCTTCTTTCATTTTAGGCAAATATAATTTGCTTTTATCATAAGAGAAATATACACCCTGATAAGTTTGATAAGATTACTAACATAGTATTCACCAGCGGGATTACGACTAATGGTACAAGTCTTGATTTTTCCCTCA >k141_50420||full ATGCTAAAGTTAGATGTTAGTAATATAAGTCCCCGTAGTGACCGTGAGGCTACTGCGGGGACGCTTTTTCAATTTATAGTATATAGAAACAAAAAGGGCCGGTCTGCGAGGACG >k141_121756||full GCCTTTGTGCTTCTTTGTTTGCCATTTGCTATCTTGCCTTTCTACTGCCTTGTCATCATATTTCACCATATTGATTTCTTGCATAGCCTCATTCGCAAAATCACGGAGCACAAAAATGGACGGTTGTCGTACACCCTGAATATGTGAGCACTACCAATGTAAACATTGATGTGAACAATATAAAGGTATGGGGTGCATTGGAGTTGCTCAATTCAAAATTTGGTGCGAACTTTGTTATTCGTGGCCGAACAATAACAATCGGTACTGCCGGTATTGCTGTGGGCAATATTTTCAAGTATGGACGTGGAAACGGTTTGTACGAAATTCAACGGCAGGCAGCCGCTGACTATTCACCTCAAGGAAAACTCACAGGCTCTTGGCGACGTGGTAGTAACAGC >k141_75580||full AGACAGATGCAGAGGTGTTGACCGTTCGTTGCTGGAGTTTCTGAAGCCGAAAGCAGAGGAACGGTTAGCCTTATCAAAGGAAGCCTTAAATACATAGGGAATGCCCAGCTTGTCGCAGATTGCTTTTGTACGCTGACCAATCATCAGGCTGCGCTCATAGCCTTCGAGCACGCAGGGACCGGCCATCAGCATCAGGGGATGGCCCTGACCTACTTCATAATTACCAACTTTAACGATTTGCATAAGTATCCTCCAGCTTATTTATTCATTTTAGCAAACAGCTCGTTGACTTTG so ,I dont know how to split them to the format needed. thank you
Dear author! After running VirHostMatcher, generated d2star_k6.csv(802M),d2star_k6_main.html(size:806M),when is opened through a browser without any useful display——just show consensus information. Relevant documents are as follows [vhm.log](https://github.com/jessieren/VirHostMatcher/files/9606062/vhm.log)
Hi， jessieren! We are using VirHostMatcher to analyze viruses and hosts in metagenomic data, but we do not know how to select the optimal threshold to analyze d2star_k6.csv, could you...
Hi, I am using VirHostMatcher to predict the interaction between host and virus. But I don’t know the threshold to pick the positive interaction result from d2star_k6.csv. Could you give...
This is a very basic question, but it seems that VirHostMatcher won't recognize my HostTaxa file... I keep getting the "ERROR: the format of taxaFile is not correct!" message and...
I removed the trailing comma from the csv output. It was adding an extra column when importing into R for example.
These are just some fixes for compiler warnings that I was getting when compiling with the `-Wall` option.